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Conference Paper
Transcription Factor Binding Sites Prediction Based on Sequence Similarity
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- Authors
- Jeong Seop Sim, Soo Jun Park
- Issue Date
- 2006-09
- Citation
- International Conference on Fuzzy Systems and Knowledge Discovery (FSKD) 2006 (LNCS 4223), v.4223, pp.1058-1061
- Publisher
- Springer
- Language
- English
- Type
- Conference Paper
- Abstract
- Sequence algorithms are widely used to study genomic sequences in such fields as DNA fragment assembly, genomic sequence similarities, motif search, etc. In this paper, we propose an algorithm that predicts transcription factor binding sites from a given set of sequences of upstream regions of genes using sequence algorithms, suffix arrays and the Smith-Waterman algorithm. © Springer-Verlag Berlin Heidelberg 2006.
- KSP Keywords
- DNA fragment assembly, Motif Search, Similarity sequence, Smith-waterman algorithm, Suffix arrays, Transcription factor binding sites, genomic sequences, sequence similarity